J5_5NDK_015
3D structure
- PDB id
- 5NDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of aminoglycoside TC007 co-crystallized with 70S ribosome from Thermus thermophilus, three tRNAs and mRNA
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.95 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5NDK|1|1H|U|1304
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5NDK_015 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0571
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5NDK|1|1H|C|609
5NDK|1|1H|G|610
5NDK|1|1H|A|611
5NDK|1|1H|C|612
5NDK|1|1H|U|613
5NDK|1|1H|C|614
*
5NDK|1|1H|G|717
5NDK|1|1H|G|718
5NDK|1|1H|A|719
5NDK|1|1H|C|720
*
5NDK|1|1H|G|858
5NDK|1|1H|U|859
5NDK|1|1H|U|860
5NDK|1|1H|C|861
*
5NDK|1|1H|G|1243
5NDK|1|1H|C|1244
*
5NDK|1|1H|G|1299
5NDK|1|1H|C|1300
5NDK|1|1H|G|1301
5NDK|1|1H|A|1302
5NDK|1|1H|A|1303
5NDK|1|1H|U|1304
5NDK|1|1H|G|1305
Current chains
- Chain 1H
- 23S ribosomal RNA
Nearby chains
- Chain 31
- 50S ribosomal protein L4
- Chain 78
- 50S ribosomal protein L15
- Chain C8
- 50S ribosomal protein L20
- Chain D8
- 50S ribosomal protein L21
- Chain Q8
- 50S ribosomal protein L35
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