J5_5NGM_003
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 5NGM|1|AA|G|1785, 5NGM|1|AA|G|1790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5NGM_003 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.0753
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
5NGM|1|AA|G|1718
5NGM|1|AA|C|1719
5NGM|1|AA|A|1720
5NGM|1|AA|A|1721
5NGM|1|AA|A|1722
5NGM|1|AA|A|1723
5NGM|1|AA|U|1724
5NGM|1|AA|G|1725
5NGM|1|AA|A|1726
*
5NGM|1|AA|U|1750
5NGM|1|AA|G|1751
*
5NGM|1|AA|C|1778
5NGM|1|AA|C|1779
*
5NGM|1|AA|G|1783
5NGM|1|AA|U|1784
5NGM|1|AA|G|1785
5NGM|1|AA|A|1786
5NGM|1|AA|A|1787
5NGM|1|AA|U|1788
5NGM|1|AA|A|1789
5NGM|1|AA|G|1790
5NGM|1|AA|G|1791
*
5NGM|1|AA|C|2015
5NGM|1|AA|A|2016
5NGM|1|AA|C|2017
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain AD
- 50S ribosomal protein L3
- Chain AI
- 50S ribosomal protein L14
- Chain AN
- 50S ribosomal protein L19
- Chain Aa
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: