J5_5NJT_007
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 5NJT|1|U|G|1787, 5NJT|1|U|G|1792
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5NJT_007 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.1322
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
5NJT|1|U|G|1719
5NJT|1|U|C|1720
5NJT|1|U|A|1721
5NJT|1|U|A|1722
5NJT|1|U|A|1723
5NJT|1|U|A|1724
5NJT|1|U|U|1725
5NJT|1|U|G|1726
5NJT|1|U|A|1727
*
5NJT|1|U|U|1751
5NJT|1|U|G|1752
*
5NJT|1|U|C|1780
5NJT|1|U|C|1781
*
5NJT|1|U|G|1785
5NJT|1|U|U|1786
5NJT|1|U|G|1787
5NJT|1|U|A|1788
5NJT|1|U|A|1789
5NJT|1|U|U|1790
5NJT|1|U|A|1791
5NJT|1|U|G|1792
5NJT|1|U|G|1793
*
5NJT|1|U|C|2017
5NJT|1|U|A|2018
5NJT|1|U|C|2019
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain X
- 50S ribosomal protein L3
- Chain d
- 50S ribosomal protein L14
- Chain i
- 50S ribosomal protein L19
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