J5_5NP6_004
3D structure
- PDB id
- 5NP6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S structure prior to bypassing
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAG*CGUAC*GGG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 5NP6|1|Y|A|532, 5NP6|1|Y|U|562
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5NP6_004 not in the Motif Atlas
- Homologous match to J5_5J7L_014
- Geometric discrepancy: 0.1389
- The information below is about J5_5J7L_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.5
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5NP6|1|Y|C|531
5NP6|1|Y|A|532
5NP6|1|Y|G|533
*
5NP6|1|Y|C|560
5NP6|1|Y|G|561
5NP6|1|Y|U|562
5NP6|1|Y|A|563
5NP6|1|Y|C|564
*
5NP6|1|Y|G|577
5NP6|1|Y|G|578
5NP6|1|Y|G|579
*
5NP6|1|Y|C|1261
5NP6|1|Y|A|1262
*
5NP6|1|Y|U|2017
5NP6|1|Y|G|2018
Current chains
- Chain Y
- 23S ribosomal RNA
Nearby chains
- Chain C
- DNA topoisomerase small subunit
- Chain h
- 50S ribosomal protein L13
- Chain o
- 50S ribosomal protein L20
- Chain p
- 50S ribosomal protein L21
- Chain q
- 50S ribosomal protein L22
- Chain y
- 50S ribosomal protein L32
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