J5_5NRG_004

3D structure

PDB id

5NRG (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the large ribosomal subunit of Staphylococcus aureus in complex with RB02

Experimental method

X-RAY DIFFRACTION

Resolution

3.44 Å

Loop

Sequence

GCAAAAUGA*UG*CC*GUGAAUAGG*CAC

Length

25 nucleotides

Bulged bases

5NRG|1|X|G|1785, 5NRG|1|X|G|1790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5NRG_004 not in the Motif Atlas

Homologous match to J5_4WF9_005

Geometric discrepancy: 0.0701

The information below is about J5_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5NRG|1|X|G|1718
5NRG|1|X|C|1719
5NRG|1|X|A|1720
5NRG|1|X|A|1721
5NRG|1|X|A|1722
5NRG|1|X|A|1723
5NRG|1|X|U|1724
5NRG|1|X|G|1725
5NRG|1|X|A|1726
*
5NRG|1|X|U|1750
5NRG|1|X|G|1751
*
5NRG|1|X|C|1778
5NRG|1|X|C|1779
*
5NRG|1|X|G|1783
5NRG|1|X|U|1784
5NRG|1|X|G|1785
5NRG|1|X|A|1786
5NRG|1|X|A|1787
5NRG|1|X|U|1788
5NRG|1|X|A|1789
5NRG|1|X|G|1790
5NRG|1|X|G|1791
*
5NRG|1|X|C|2015
5NRG|1|X|A|2016
5NRG|1|X|C|2017

Current chains

Chain X

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14

Chain M

50S ribosomal protein L19