J5_5O60_006

3D structure

PDB id

5O60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the 50S large ribosomal subunit from Mycobacterium smegmatis

Experimental method

ELECTRON MICROSCOPY

Resolution

3.18 Å

Loop

Sequence

GCAAAAUGC*GA*UG*CAAACCAGU*AAC

Length

25 nucleotides

Bulged bases

5O60|1|A|A|1975, 5O60|1|A|G|1980

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5O60_006 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.1039

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5O60|1|A|G|1892
5O60|1|A|C|1893
5O60|1|A|A|1894
5O60|1|A|A|1895
5O60|1|A|A|1896
5O60|1|A|A|1897
5O60|1|A|U|1898
5O60|1|A|G|1899
5O60|1|A|C|1900
*
5O60|1|A|G|1924
5O60|1|A|A|1925
*
5O60|1|A|U|1968
5O60|1|A|G|1969
*
5O60|1|A|C|1973
5O60|1|A|A|1974
5O60|1|A|A|1975
5O60|1|A|A|1976
5O60|1|A|C|1977
5O60|1|A|C|1978
5O60|1|A|A|1979
5O60|1|A|G|1980
5O60|1|A|U|1981
*
5O60|1|A|A|2212
5O60|1|A|A|2213
5O60|1|A|C|2214

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain L

50S ribosomal protein L14

Chain Q

50S ribosomal protein L19