J5_5O61_001

3D structure

PDB id

5O61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the Mycobacterium smegmatis 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.31 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

5O61|1|A|U|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5O61_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0975

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5O61|1|A|C|44
5O61|1|A|G|45
5O61|1|A|A|46
5O61|1|A|U|47
5O61|1|A|G|48
5O61|1|A|A|49
5O61|1|A|A|50
5O61|1|A|G|51
*
5O61|1|A|C|113
5O61|1|A|G|114
5O61|1|A|A|115
5O61|1|A|A|116
5O61|1|A|U|117
5O61|1|A|G|118
*
5O61|1|A|C|127
5O61|1|A|G|128
*
5O61|1|A|C|147
5O61|1|A|A|148
5O61|1|A|C|149
*
5O61|1|A|G|175
5O61|1|A|G|176
5O61|1|A|G|177

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L23

Chain d

50S ribosomal protein L34