J5_5O61_011
3D structure
- PDB id
- 5O61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The complete structure of the Mycobacterium smegmatis 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.31 Å
Loop
- Sequence
- CAAG*CGAACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5O61|1|BA|A|105, 5O61|1|BA|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5O61_011 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.0941
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.6
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5O61|1|BA|C|62
5O61|1|BA|A|63
5O61|1|BA|A|64
5O61|1|BA|G|65
*
5O61|1|BA|C|102
5O61|1|BA|G|103
5O61|1|BA|A|104
5O61|1|BA|A|105
5O61|1|BA|C|106
5O61|1|BA|G|107
5O61|1|BA|G|108
5O61|1|BA|G|109
*
5O61|1|BA|C|314
5O61|1|BA|A|315
5O61|1|BA|C|316
*
5O61|1|BA|G|337
5O61|1|BA|A|338
5O61|1|BA|C|339
*
5O61|1|BA|G|350
5O61|1|BA|G|351
5O61|1|BA|C|352
5O61|1|BA|A|353
5O61|1|BA|G|354
Current chains
- Chain BA
- 16S rRNA
Nearby chains
- Chain BP
- 30S ribosomal protein S16
- Chain BT
- 30S ribosomal protein S20
- Chain L
- 50S ribosomal protein L14
- Chain Q
- 50S ribosomal protein L19
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