J5_5OA3_001

3D structure

PDB id

5OA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 40S-eIF2D-re-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CCAU*AUAG

Length

26 nucleotides

Bulged bases

5OA3|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5OA3_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.1089

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5OA3|1|2|C|30
5OA3|1|2|U|31
5OA3|1|2|U|32
5OA3|1|2|G|33
5OA3|1|2|U|34
*
5OA3|1|2|A|521
5OA3|1|2|A|522
5OA3|1|2|A|523
5OA3|1|2|U|524
5OA3|1|2|A|525
5OA3|1|2|A|526
5OA3|1|2|C|527
*
5OA3|1|2|G|558
5OA3|1|2|G|559
5OA3|1|2|A|560
5OA3|1|2|A|561
5OA3|1|2|U|562
5OA3|1|2|G|563
*
5OA3|1|2|C|592
5OA3|1|2|C|593
5OA3|1|2|A|594
5OA3|1|2|U|595
*
5OA3|1|2|A|641
5OA3|1|2|U|642
5OA3|1|2|A|643
5OA3|1|2|G|644

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S9

Chain X

40S ribosomal protein S23

Chain e

40S ribosomal protein S30