J5_5OT7_001
3D structure
- PDB id
- 5OT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation factor G-ribosome complex captures in the absence of inhibitors.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5OT7_001 not in the Motif Atlas
- Homologous match to J5_4LFB_001
- Geometric discrepancy: 0.1303
- The information below is about J5_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_70703.1
- Basepair signature
- cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
5OT7|1|1|C|36
5OT7|1|1|U|37
5OT7|1|1|G|38
5OT7|1|1|G|39
*
5OT7|1|1|C|403
5OT7|1|1|U|404
5OT7|1|1|U|405
5OT7|1|1|G|406
*
5OT7|1|1|C|436
5OT7|1|1|U|437
5OT7|1|1|G|438
5OT7|1|1|A|439
5OT7|1|1|A|441
5OT7|1|1|C|442
*
5OT7|1|1|G|492
5OT7|1|1|G|493
5OT7|1|1|U|494
5OT7|1|1|A|495
5OT7|1|1|A|497
5OT7|1|1|U|498
5OT7|1|1|A|499
5OT7|1|1|G|500
*
5OT7|1|1|C|545
5OT7|1|1|G|546
5OT7|1|1|A|547
5OT7|1|1|G|548
Current chains
- Chain 1
- 16S Ribosomal RNA
Nearby chains
- Chain C
- 30S ribosomal protein S4
- Chain K
- 30S ribosomal protein S12
- Chain U
- Elongation factor G
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