J5_5OT7_008
3D structure
- PDB id
- 5OT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongation factor G-ribosome complex captures in the absence of inhibitors.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5OT7|1|1|A|60, 5OT7|1|1|A|109, 5OT7|1|1|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5OT7_008 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.132
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.1
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5OT7|1|1|C|58
5OT7|1|1|A|59
5OT7|1|1|A|60
5OT7|1|1|G|61
*
5OT7|1|1|C|106
5OT7|1|1|G|107
5OT7|1|1|G|108
5OT7|1|1|A|109
5OT7|1|1|C|110
5OT7|1|1|G|111
5OT7|1|1|G|112
5OT7|1|1|G|113
*
5OT7|1|1|C|314
5OT7|1|1|A|315
5OT7|1|1|G|316
*
5OT7|1|1|C|337
5OT7|1|1|A|338
5OT7|1|1|C|339
*
5OT7|1|1|G|350
5OT7|1|1|G|351
5OT7|1|1|C|352
5OT7|1|1|A|353
5OT7|1|1|G|354
Current chains
- Chain 1
- 16S Ribosomal RNA
Nearby chains
- Chain O
- 30S ribosomal protein S16
- Chain S
- 30S ribosomal protein S20
- Chain p
- 50S ribosomal protein L14
- Chain u
- 50S ribosomal protein L19
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