J5_5T2A_001
3D structure
- PDB id
- 5T2A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CryoEM structure of the Leishmania donovani 80S ribosome at 2.9 Angstrom resolution
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAUG*CGCAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5T2A|1|2|A|91, 5T2A|1|2|C|467
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5T2A_001 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.119
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5T2A|1|2|C|54
5T2A|1|2|A|55
5T2A|1|2|U|56
5T2A|1|2|G|57
*
5T2A|1|2|C|88
5T2A|1|2|G|89
5T2A|1|2|C|90
5T2A|1|2|A|91
5T2A|1|2|U|92
5T2A|1|2|G|93
5T2A|1|2|G|94
5T2A|1|2|C|95
*
5T2A|1|2|G|429
5T2A|1|2|A|430
5T2A|1|2|G|431
*
5T2A|1|2|C|452
5T2A|1|2|A|453
5T2A|1|2|C|454
*
5T2A|1|2|G|465
5T2A|1|2|G|466
5T2A|1|2|C|467
5T2A|1|2|A|468
5T2A|1|2|G|469
Current chains
- Chain 2
- 18S rRNA
Nearby chains
- Chain 1
- eS4
- Chain 3
- eS6
- Chain 5
- eS8
- Chain 6
- uS4
- Chain AT
- eS24
- Chain U
- uL14
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