J5_5TCU_011
3D structure
- PDB id
- 5TCU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Methicillin sensitive Staphylococcus aureus 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GCAAAAUGA*UG*CC*GUGAAUAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 5TCU|1|B|G|1785, 5TCU|1|B|G|1790
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5TCU_011 not in the Motif Atlas
- Homologous match to J5_4WF9_005
- Geometric discrepancy: 0.1239
- The information below is about J5_4WF9_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.1
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
5TCU|1|B|G|1718
5TCU|1|B|C|1719
5TCU|1|B|A|1720
5TCU|1|B|A|1721
5TCU|1|B|A|1722
5TCU|1|B|A|1723
5TCU|1|B|U|1724
5TCU|1|B|G|1725
5TCU|1|B|A|1726
*
5TCU|1|B|U|1750
5TCU|1|B|G|1751
*
5TCU|1|B|C|1778
5TCU|1|B|C|1779
*
5TCU|1|B|G|1783
5TCU|1|B|U|1784
5TCU|1|B|G|1785
5TCU|1|B|A|1786
5TCU|1|B|A|1787
5TCU|1|B|U|1788
5TCU|1|B|A|1789
5TCU|1|B|G|1790
5TCU|1|B|G|1791
*
5TCU|1|B|C|2015
5TCU|1|B|A|2016
5TCU|1|B|C|2017
Current chains
- Chain B
- 23S RRNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain L1
- 50S ribosomal protein L19
- Chain LC
- 50S ribosomal protein L3
- Chain LN
- 50S ribosomal protein L14
Coloring options: