3D structure

PDB id
5U9F (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.2 A cryo-EM ArfA-RF2 ribosome rescue complex (Structure II)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGACUU*AGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
5U9F|1|01|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_5U9F_003 not in the Motif Atlas
Homologous match to J5_5J7L_015
Geometric discrepancy: 0.079
The information below is about J5_5J7L_015
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

5U9F|1|01|C|584
5U9F|1|01|G|585
5U9F|1|01|A|586
5U9F|1|01|C|587
5U9F|1|01|U|588
5U9F|1|01|U|589
*
5U9F|1|01|A|668
5U9F|1|01|G|669
5U9F|1|01|A|670
5U9F|1|01|C|671
*
5U9F|1|01|G|809
5U9F|1|01|U|810
5U9F|1|01|U|811
5U9F|1|01|C|812
*
5U9F|1|01|G|1195
5U9F|1|01|C|1196
*
5U9F|1|01|G|1250
5U9F|1|01|C|1251
5U9F|1|01|G|1252
5U9F|1|01|A|1253
5U9F|1|01|A|1254
5U9F|1|01|U|1255
5U9F|1|01|G|1256

Current chains

Chain 01
23S ribosomal RNA

Nearby chains

Chain 06
50S ribosomal protein L4
Chain 14
50S ribosomal protein L15
Chain 19
50S ribosomal protein L20
Chain 20
50S ribosomal protein L21
Chain 33
50S ribosomal protein L35

Coloring options:


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