J5_5UQ7_001

3D structure

PDB id

5UQ7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stemloop and E-site tRNA ('in' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

5UQ7|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5UQ7_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.1022

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5UQ7|1|A|C|47
5UQ7|1|A|G|48
5UQ7|1|A|A|49
5UQ7|1|A|U|50
5UQ7|1|A|G|51
5UQ7|1|A|A|52
5UQ7|1|A|A|53
5UQ7|1|A|G|54
*
5UQ7|1|A|C|116
5UQ7|1|A|G|117
5UQ7|1|A|A|118
5UQ7|1|A|A|119
5UQ7|1|A|U|120
5UQ7|1|A|G|121
*
5UQ7|1|A|C|130
5UQ7|1|A|G|131
*
5UQ7|1|A|C|148
5UQ7|1|A|A|149
5UQ7|1|A|C|150
*
5UQ7|1|A|G|176
5UQ7|1|A|G|177
5UQ7|1|A|G|178

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain X

50S ribosomal protein L23