J5_5UQ8_001

3D structure

PDB id

5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

5UQ8|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5UQ8_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.1017

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5UQ8|1|A|C|47
5UQ8|1|A|G|48
5UQ8|1|A|A|49
5UQ8|1|A|U|50
5UQ8|1|A|G|51
5UQ8|1|A|A|52
5UQ8|1|A|A|53
5UQ8|1|A|G|54
*
5UQ8|1|A|C|116
5UQ8|1|A|G|117
5UQ8|1|A|A|118
5UQ8|1|A|A|119
5UQ8|1|A|U|120
5UQ8|1|A|G|121
*
5UQ8|1|A|C|130
5UQ8|1|A|G|131
*
5UQ8|1|A|C|148
5UQ8|1|A|A|149
5UQ8|1|A|C|150
*
5UQ8|1|A|G|176
5UQ8|1|A|G|177
5UQ8|1|A|G|178

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain X

50S ribosomal protein L23