3D structure

PDB id
5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CGACUC*GGAC*GUUC*GC*GCGAAUG
Length
23 nucleotides
Bulged bases
5UQ8|1|A|U|1255
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_5UQ8_004 not in the Motif Atlas
Homologous match to J5_9DFE_004
Geometric discrepancy: 0.0755
The information below is about J5_9DFE_004
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_74302.5
Basepair signature
cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
Number of instances in this motif group
4

Unit IDs

5UQ8|1|A|C|584
5UQ8|1|A|G|585
5UQ8|1|A|A|586
5UQ8|1|A|C|587
5UQ8|1|A|U|588
5UQ8|1|A|C|589
*
5UQ8|1|A|G|668
5UQ8|1|A|G|669
5UQ8|1|A|A|670
5UQ8|1|A|C|671
*
5UQ8|1|A|G|809
5UQ8|1|A|U|810
5UQ8|1|A|U|811
5UQ8|1|A|C|812
*
5UQ8|1|A|G|1195
5UQ8|1|A|C|1196
*
5UQ8|1|A|G|1250
5UQ8|1|A|C|1251
5UQ8|1|A|G|1252
5UQ8|1|A|A|1253
5UQ8|1|A|A|1254
5UQ8|1|A|U|1255
5UQ8|1|A|G|1256

Current chains

Chain A
23S rRNA

Nearby chains

Chain 8
50S ribosomal protein L35
Chain F
50S ribosomal protein L4
Chain P
50S ribosomal protein L15
Chain U
50S ribosomal protein L20
Chain V
50S ribosomal protein L21

Coloring options:


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