J5_5UQ8_004
3D structure
- PDB id
- 5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5UQ8|1|A|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5UQ8_004 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.0755
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5UQ8|1|A|C|584
5UQ8|1|A|G|585
5UQ8|1|A|A|586
5UQ8|1|A|C|587
5UQ8|1|A|U|588
5UQ8|1|A|C|589
*
5UQ8|1|A|G|668
5UQ8|1|A|G|669
5UQ8|1|A|A|670
5UQ8|1|A|C|671
*
5UQ8|1|A|G|809
5UQ8|1|A|U|810
5UQ8|1|A|U|811
5UQ8|1|A|C|812
*
5UQ8|1|A|G|1195
5UQ8|1|A|C|1196
*
5UQ8|1|A|G|1250
5UQ8|1|A|C|1251
5UQ8|1|A|G|1252
5UQ8|1|A|A|1253
5UQ8|1|A|A|1254
5UQ8|1|A|U|1255
5UQ8|1|A|G|1256
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 8
- 50S ribosomal protein L35
- Chain F
- 50S ribosomal protein L4
- Chain P
- 50S ribosomal protein L15
- Chain U
- 50S ribosomal protein L20
- Chain V
- 50S ribosomal protein L21
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