3D structure

PDB id
5UQ8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome complex with dnaX mRNA stem-loop and E-site tRNA ('out' conformation)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
Length
26 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_5UQ8_009 not in the Motif Atlas
Homologous match to J5_4LFB_001
Geometric discrepancy: 0.0922
The information below is about J5_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_70703.1
Basepair signature
cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
Number of instances in this motif group
1

Unit IDs

5UQ8|1|a|C|36
5UQ8|1|a|U|37
5UQ8|1|a|G|38
5UQ8|1|a|G|39
*
5UQ8|1|a|C|403
5UQ8|1|a|U|404
5UQ8|1|a|U|405
5UQ8|1|a|G|406
*
5UQ8|1|a|C|436
5UQ8|1|a|U|437
5UQ8|1|a|G|438
5UQ8|1|a|A|439
5UQ8|1|a|A|441
5UQ8|1|a|C|442
*
5UQ8|1|a|G|492
5UQ8|1|a|G|493
5UQ8|1|a|U|494
5UQ8|1|a|A|495
5UQ8|1|a|A|496
5UQ8|1|a|U|498
5UQ8|1|a|A|499
5UQ8|1|a|G|500
*
5UQ8|1|a|C|545
5UQ8|1|a|G|546
5UQ8|1|a|A|547
5UQ8|1|a|G|548

Current chains

Chain a
16S rRNA

Nearby chains

Chain d
30S ribosomal protein S4
Chain l
30S ribosomal protein S12

Coloring options:


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