J5_5UYK_006
3D structure
- PDB id
- 5UYK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with cognate ternary complex not base-paired to A site codon (Structure I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 5UYK|1|01|U|2076, 5UYK|1|01|G|2428, 5UYK|1|01|G|2429, 5UYK|1|01|A|2430, 5UYK|1|01|U|2431
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5UYK_006 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.1731
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.1
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5UYK|1|01|U|2074
5UYK|1|01|U|2075
5UYK|1|01|U|2076
5UYK|1|01|A|2077
*
5UYK|1|01|U|2243
5UYK|1|01|U|2244
5UYK|1|01|U|2245
5UYK|1|01|G|2246
*
5UYK|1|01|C|2258
5UYK|1|01|U|2259
*
5UYK|1|01|A|2281
5UYK|1|01|G|2282
*
5UYK|1|01|C|2427
5UYK|1|01|G|2428
5UYK|1|01|G|2429
5UYK|1|01|A|2430
5UYK|1|01|U|2431
5UYK|1|01|A|2432
5UYK|1|01|A|2433
5UYK|1|01|A|2434
5UYK|1|01|A|2435
Current chains
- Chain 01
- 23S ribosomal RNA
Nearby chains
- Chain 04
- 50S ribosomal protein L2
- Chain 14
- 50S ribosomal protein L15
- Chain 25
- 50S ribosomal protein L27
- Chain 26
- 50S ribosomal protein L28
- Chain 31
- 50S ribosomal protein L33
- Chain 33
- 50S ribosomal protein L35
- Chain X
- Transfer RNA; tRNA
Coloring options: