J5_5UYN_009
3D structure
- PDB id
- 5UYN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome bound with near-cognate ternary complex not base-paired to A site codon (Structure I-nc)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 5UYN|1|A|A|109, 5UYN|1|A|C|352, 5UYN|1|A|A|353
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5UYN_009 not in the Motif Atlas
- Homologous match to J5_6CZR_021
- Geometric discrepancy: 0.1377
- The information below is about J5_6CZR_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.5
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5UYN|1|A|C|58
5UYN|1|A|A|59
5UYN|1|A|A|60
5UYN|1|A|G|61
*
5UYN|1|A|C|106
5UYN|1|A|G|107
5UYN|1|A|G|108
5UYN|1|A|A|109
5UYN|1|A|C|110
5UYN|1|A|G|111
5UYN|1|A|G|112
5UYN|1|A|G|113
*
5UYN|1|A|C|314
5UYN|1|A|A|315
5UYN|1|A|C|316
*
5UYN|1|A|G|337
5UYN|1|A|A|338
5UYN|1|A|C|339
*
5UYN|1|A|G|350
5UYN|1|A|G|351
5UYN|1|A|C|352
5UYN|1|A|A|353
5UYN|1|A|G|354
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain 13
- 50S ribosomal protein L14
- Chain 18
- 50S ribosomal protein L19
- Chain P
- 30S ribosomal protein S16
- Chain T
- 30S ribosomal protein S20
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