J5_5V7Q_005

3D structure

PDB id

5V7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the large ribosomal subunit from Mycobacterium tuberculosis bound with a potent linezolid analog

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCAAAAUGC*GA*UC*GAAACCAGU*AAC

Length

25 nucleotides

Bulged bases

5V7Q|1|A|A|1992, 5V7Q|1|A|G|1997

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5V7Q_005 not in the Motif Atlas

Homologous match to J5_5J7L_016

Geometric discrepancy: 0.2286

The information below is about J5_5J7L_016

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_62523.6

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

5V7Q|1|A|G|1909
5V7Q|1|A|C|1910
5V7Q|1|A|A|1911
5V7Q|1|A|A|1912
5V7Q|1|A|A|1913
5V7Q|1|A|A|1914
5V7Q|1|A|U|1915
5V7Q|1|A|G|1916
5V7Q|1|A|C|1917
*
5V7Q|1|A|G|1941
5V7Q|1|A|A|1942
*
5V7Q|1|A|U|1985
5V7Q|1|A|C|1986
*
5V7Q|1|A|G|1990
5V7Q|1|A|A|1991
5V7Q|1|A|A|1992
5V7Q|1|A|A|1993
5V7Q|1|A|C|1994
5V7Q|1|A|C|1995
5V7Q|1|A|A|1996
5V7Q|1|A|G|1997
5V7Q|1|A|U|1998
*
5V7Q|1|A|A|2226
5V7Q|1|A|A|2227
5V7Q|1|A|C|2228

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14

Chain P

50S ribosomal protein L19