J5_5V93_001

3D structure

PDB id

5V93 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAC*GAG

Length

22 nucleotides

Bulged bases

5V93|1|A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5V93_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.1534

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

5V93|1|A|C|47
5V93|1|A|G|48
5V93|1|A|A|49
5V93|1|A|U|50
5V93|1|A|G|51
5V93|1|A|A|52
5V93|1|A|A|53
5V93|1|A|G|54
*
5V93|1|A|C|116
5V93|1|A|G|117
5V93|1|A|A|118
5V93|1|A|A|119
5V93|1|A|U|120
5V93|1|A|G|121
*
5V93|1|A|C|130
5V93|1|A|A|131
*
5V93|1|A|U|150
5V93|1|A|A|151
5V93|1|A|C|152
*
5V93|1|A|G|178
5V93|1|A|A|179
5V93|1|A|G|180

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain T

50S ribosomal protein L23