J5_5VP2_020
3D structure
- PDB id
- 5VP2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of the Thermus thermophilus 70S ribosome in complex with madumycin II and bound to mRNA and A-, P- and E-site tRNAs at 2.8A resolution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.8 Å
Loop
- Sequence
- CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
- Length
- 26 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5VP2_020 not in the Motif Atlas
- Homologous match to J5_4LFB_001
- Geometric discrepancy: 0.0797
- The information below is about J5_4LFB_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_70703.1
- Basepair signature
- cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
5VP2|1|1a|C|36
5VP2|1|1a|U|37
5VP2|1|1a|G|38
5VP2|1|1a|G|39
*
5VP2|1|1a|C|403
5VP2|1|1a|U|404
5VP2|1|1a|U|405
5VP2|1|1a|G|406
*
5VP2|1|1a|C|436
5VP2|1|1a|U|437
5VP2|1|1a|G|438
5VP2|1|1a|A|439
5VP2|1|1a|A|441
5VP2|1|1a|C|442
*
5VP2|1|1a|G|492
5VP2|1|1a|G|493
5VP2|1|1a|U|494
5VP2|1|1a|A|495
5VP2|1|1a|A|496
5VP2|1|1a|U|498
5VP2|1|1a|A|499
5VP2|1|1a|G|500
*
5VP2|1|1a|C|545
5VP2|1|1a|G|546
5VP2|1|1a|A|547
5VP2|1|1a|G|548
Current chains
- Chain 1a
- 16S ribosomal RNA
Nearby chains
- Chain 1d
- 30S ribosomal protein S4
- Chain 1l
- 30S ribosomal protein S12
Coloring options: