J5_5VPO_013
3D structure
- PDB id
- 5VPO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The 70S P-site ASL SufA6 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.34 Å
Loop
- Sequence
- CGAUGAAG*CGAAUG*CG*CAC*GGG
- Length
- 22 nucleotides
- Bulged bases
- 5VPO|1|YA|U|50
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5VPO_013 not in the Motif Atlas
- Homologous match to J5_9DFE_001
- Geometric discrepancy: 0.0509
- The information below is about J5_9DFE_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
5VPO|1|YA|C|47
5VPO|1|YA|G|48
5VPO|1|YA|A|49
5VPO|1|YA|U|50
5VPO|1|YA|G|51
5VPO|1|YA|A|52
5VPO|1|YA|A|53
5VPO|1|YA|G|54
*
5VPO|1|YA|C|116
5VPO|1|YA|G|117
5VPO|1|YA|A|118
5VPO|1|YA|A|119
5VPO|1|YA|U|120
5VPO|1|YA|G|121
*
5VPO|1|YA|C|130
5VPO|1|YA|G|131
*
5VPO|1|YA|C|148
5VPO|1|YA|A|149
5VPO|1|YA|C|150
*
5VPO|1|YA|G|176
5VPO|1|YA|G|177
5VPO|1|YA|G|178
Current chains
- Chain YA
- 23S rRNA
Nearby chains
- Chain Y7
- 50S ribosomal protein L34
- Chain YX
- 50S ribosomal protein L23
Coloring options: