J5_5WIT_001

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

5WIT|1|1A|U|49

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_5WIT_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0611

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

5WIT|1|1A|C|46
5WIT|1|1A|G|47
5WIT|1|1A|A|48
5WIT|1|1A|U|49
5WIT|1|1A|G|50
5WIT|1|1A|A|51
5WIT|1|1A|A|52
5WIT|1|1A|G|53
*
5WIT|1|1A|C|114
5WIT|1|1A|G|115
5WIT|1|1A|A|116
5WIT|1|1A|A|117
5WIT|1|1A|U|118
5WIT|1|1A|G|119
*
5WIT|1|1A|C|128
5WIT|1|1A|G|129
*
5WIT|1|1A|C|148
5WIT|1|1A|A|149
5WIT|1|1A|C|150
*
5WIT|1|1A|G|165
5WIT|1|1A|G|166
5WIT|1|1A|G|167

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23