J5_5XYM_002
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- CCG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 5XYM|1|A|C|622, 5XYM|1|A|U|657
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5XYM_002 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.1286
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5XYM|1|A|C|621
5XYM|1|A|C|622
5XYM|1|A|G|623
*
5XYM|1|A|C|655
5XYM|1|A|G|656
5XYM|1|A|U|657
5XYM|1|A|G|658
5XYM|1|A|C|659
*
5XYM|1|A|G|672
5XYM|1|A|A|673
5XYM|1|A|G|674
*
5XYM|1|A|C|1379
5XYM|1|A|A|1380
*
5XYM|1|A|U|2244
5XYM|1|A|G|2245
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain 0
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
- Chain S
- 50S ribosomal protein L22
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