J5_5XYM_003
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- CGAGUC*GGAC*GUUC*GC*GAGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 5XYM|1|A|U|1373
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5XYM_003 not in the Motif Atlas
- Homologous match to J5_5J7L_015
- Geometric discrepancy: 0.094
- The information below is about J5_5J7L_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.5
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
5XYM|1|A|C|679
5XYM|1|A|G|680
5XYM|1|A|A|681
5XYM|1|A|G|682
5XYM|1|A|U|683
5XYM|1|A|C|684
*
5XYM|1|A|G|786
5XYM|1|A|G|787
5XYM|1|A|A|788
5XYM|1|A|C|789
*
5XYM|1|A|G|927
5XYM|1|A|U|928
5XYM|1|A|U|929
5XYM|1|A|C|930
*
5XYM|1|A|G|1313
5XYM|1|A|C|1314
*
5XYM|1|A|G|1368
5XYM|1|A|A|1369
5XYM|1|A|G|1370
5XYM|1|A|A|1371
5XYM|1|A|A|1372
5XYM|1|A|U|1373
5XYM|1|A|G|1374
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain 3
- 50S ribosomal protein L35
- Chain E
- 50S ribosomal protein L4
- Chain L
- 50S ribosomal protein L15
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
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