J5_5XYM_007
3D structure
- PDB id
- 5XYM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Large subunit of Mycobacterium smegmatis
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.08 Å
Loop
- Sequence
- UUCA*UUUA*UG*CG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 5XYM|1|A|C|2302, 5XYM|1|A|G|2655, 5XYM|1|A|G|2656, 5XYM|1|A|A|2657, 5XYM|1|A|U|2658
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5XYM_007 not in the Motif Atlas
- Homologous match to J5_4WF9_007
- Geometric discrepancy: 0.0927
- The information below is about J5_4WF9_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
5XYM|1|A|U|2300
5XYM|1|A|U|2301
5XYM|1|A|C|2302
5XYM|1|A|A|2303
*
5XYM|1|A|U|2470
5XYM|1|A|U|2471
5XYM|1|A|U|2472
5XYM|1|A|A|2473
*
5XYM|1|A|U|2485
5XYM|1|A|G|2486
*
5XYM|1|A|C|2508
5XYM|1|A|G|2509
*
5XYM|1|A|C|2654
5XYM|1|A|G|2655
5XYM|1|A|G|2656
5XYM|1|A|A|2657
5XYM|1|A|U|2658
5XYM|1|A|A|2659
5XYM|1|A|A|2660
5XYM|1|A|A|2661
5XYM|1|A|A|2662
Current chains
- Chain A
- 23S RNA
Nearby chains
- Chain C
- 50S ribosomal protein L2
- Chain L
- 50S ribosomal protein L15
- Chain W
- 50S ribosomal protein L27
- Chain X
- 50S ribosomal protein L28
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