J5_5Z3G_001
3D structure
- PDB id
- 5Z3G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a nucleolar pre-60S ribosome (Rpf1-TAP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.65 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 5Z3G|1|B|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5Z3G_001 not in the Motif Atlas
- Homologous match to J5_8P9A_010
- Geometric discrepancy: 0.1391
- The information below is about J5_8P9A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_01737.2
- Basepair signature
- cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
- Number of instances in this motif group
- 5
Unit IDs
5Z3G|1|A|A|20
5Z3G|1|A|G|21
5Z3G|1|A|G|22
*
5Z3G|1|B|C|35
5Z3G|1|B|G|36
5Z3G|1|B|A|37
5Z3G|1|B|U|38
5Z3G|1|B|G|39
5Z3G|1|B|A|40
5Z3G|1|B|A|41
5Z3G|1|B|G|42
*
5Z3G|1|B|U|102
5Z3G|1|B|G|103
5Z3G|1|B|A|104
5Z3G|1|B|A|105
5Z3G|1|B|C|106
5Z3G|1|B|G|107
*
5Z3G|1|B|C|115
5Z3G|1|B|G|116
*
5Z3G|1|B|C|137
5Z3G|1|B|A|138
5Z3G|1|B|U|139
Current chains
- Chain A
- 25S rRNA
- Chain B
- 5.8S rRNA
Nearby chains
- Chain M
- Nucleolar protein 7
- Chain R
- 60S ribosomal protein L15-A
- Chain l
- 60S ribosomal protein L35-A
- Chain n
- 60S ribosomal protein L37-A
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