J5_5ZEB_003
3D structure
- PDB id
- 5ZEB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- M. Smegmatis P/P state 70S ribosome structure
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCG*CGUGC*GAG*CA*UG
- Length
- 15 nucleotides
- Bulged bases
- 5ZEB|1|A|C|619, 5ZEB|1|A|U|654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_5ZEB_003 not in the Motif Atlas
- Homologous match to J5_9DFE_003
- Geometric discrepancy: 0.119
- The information below is about J5_9DFE_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_43153.6
- Basepair signature
- cWW-cWW-cWW-F-cWW-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
5ZEB|1|A|C|618
5ZEB|1|A|C|619
5ZEB|1|A|G|620
*
5ZEB|1|A|C|652
5ZEB|1|A|G|653
5ZEB|1|A|U|654
5ZEB|1|A|G|655
5ZEB|1|A|C|656
*
5ZEB|1|A|G|669
5ZEB|1|A|A|670
5ZEB|1|A|G|671
*
5ZEB|1|A|C|1376
5ZEB|1|A|A|1377
*
5ZEB|1|A|U|2241
5ZEB|1|A|G|2242
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L4
- Chain R
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L21
- Chain T
- 50S ribosomal protein L22
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