J5_6AWC_002

3D structure

PDB id

6AWC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S ribosomal subunit and RNA polymerase complex in rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

7.9 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

6AWC|1|A|A|60, 6AWC|1|A|A|109, 6AWC|1|A|C|352, 6AWC|1|A|A|353

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6AWC_002 not in the Motif Atlas

Homologous match to J5_6CZR_021

Geometric discrepancy: 0.2421

The information below is about J5_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.5

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6AWC|1|A|C|58
6AWC|1|A|A|59
6AWC|1|A|A|60
6AWC|1|A|G|61
*
6AWC|1|A|C|106
6AWC|1|A|G|107
6AWC|1|A|G|108
6AWC|1|A|A|109
6AWC|1|A|C|110
6AWC|1|A|G|111
6AWC|1|A|G|112
6AWC|1|A|G|113
*
6AWC|1|A|C|314
6AWC|1|A|A|315
6AWC|1|A|C|316
*
6AWC|1|A|G|337
6AWC|1|A|A|338
6AWC|1|A|C|339
*
6AWC|1|A|G|350
6AWC|1|A|G|351
6AWC|1|A|C|352
6AWC|1|A|A|353
6AWC|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S16

Chain W

30S ribosomal protein S20