J5_6AWD_002

3D structure

PDB id

6AWD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S (S1 depleted) ribosomal subunit and RNA polymerase complex

Experimental method

ELECTRON MICROSCOPY

Resolution

8.1 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

6AWD|1|A|A|60, 6AWD|1|A|A|109, 6AWD|1|A|C|352, 6AWD|1|A|A|353

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6AWD_002 not in the Motif Atlas

Homologous match to J5_6CZR_021

Geometric discrepancy: 0.2144

The information below is about J5_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.5

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6AWD|1|A|C|58
6AWD|1|A|A|59
6AWD|1|A|A|60
6AWD|1|A|G|61
*
6AWD|1|A|C|106
6AWD|1|A|G|107
6AWD|1|A|G|108
6AWD|1|A|A|109
6AWD|1|A|C|110
6AWD|1|A|G|111
6AWD|1|A|G|112
6AWD|1|A|G|113
*
6AWD|1|A|C|314
6AWD|1|A|A|315
6AWD|1|A|C|316
*
6AWD|1|A|G|337
6AWD|1|A|A|338
6AWD|1|A|C|339
*
6AWD|1|A|G|350
6AWD|1|A|G|351
6AWD|1|A|C|352
6AWD|1|A|A|353
6AWD|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain S

30S ribosomal protein S16

Chain W

30S ribosomal protein S20