J5_6AZ1_002
3D structure
- PDB id
- 6AZ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the small subunit of Leishmania ribosome bound to paromomycin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CAUG*CGCAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6AZ1|1|1|A|91, 6AZ1|1|1|C|467
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6AZ1_002 not in the Motif Atlas
- Homologous match to J5_8C3A_020
- Geometric discrepancy: 0.1076
- The information below is about J5_8C3A_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6AZ1|1|1|C|54
6AZ1|1|1|A|55
6AZ1|1|1|U|56
6AZ1|1|1|G|57
*
6AZ1|1|1|C|88
6AZ1|1|1|G|89
6AZ1|1|1|C|90
6AZ1|1|1|A|91
6AZ1|1|1|U|92
6AZ1|1|1|G|93
6AZ1|1|1|G|94
6AZ1|1|1|C|95
*
6AZ1|1|1|G|429
6AZ1|1|1|A|430
6AZ1|1|1|G|431
*
6AZ1|1|1|C|452
6AZ1|1|1|A|453
6AZ1|1|1|C|454
*
6AZ1|1|1|G|465
6AZ1|1|1|G|466
6AZ1|1|1|C|467
6AZ1|1|1|A|468
6AZ1|1|1|G|469
Current chains
- Chain 1
- ribosomal RNA 18S
Nearby chains
- Chain D
- ribosomal protein S4
- Chain E
- ribosomal protein S4e
- Chain G
- ribosomal protein S6e
- Chain K
- ribosomal protein S8e
- Chain Z
- ribosomal protein S24e
Coloring options: