J5_6B4V_006
3D structure
- PDB id
- 6B4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- CGACUC*GGAC*GUUC*GC*GCGAAUG
- Length
- 23 nucleotides
- Bulged bases
- 6B4V|1|B|U|1255
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6B4V_006 not in the Motif Atlas
- Homologous match to J5_9DFE_004
- Geometric discrepancy: 0.082
- The information below is about J5_9DFE_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_74302.6
- Basepair signature
- cWW-tSH-tSS-tHW-F-cHS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 4
Unit IDs
6B4V|1|B|C|584
6B4V|1|B|G|585
6B4V|1|B|A|586
6B4V|1|B|C|587
6B4V|1|B|U|588
6B4V|1|B|C|589
*
6B4V|1|B|G|668
6B4V|1|B|G|669
6B4V|1|B|A|670
6B4V|1|B|C|671
*
6B4V|1|B|G|809
6B4V|1|B|U|810
6B4V|1|B|U|811
6B4V|1|B|C|812
*
6B4V|1|B|G|1195
6B4V|1|B|C|1196
*
6B4V|1|B|G|1250
6B4V|1|B|C|1251
6B4V|1|B|G|1252
6B4V|1|B|A|1253
6B4V|1|B|A|1254
6B4V|1|B|U|1255
6B4V|1|B|G|1256
Current chains
- Chain B
- 23S ribosomal RNA
Nearby chains
- Chain FA
- 50S ribosomal protein L35
- Chain G
- 50S ribosomal protein L4
- Chain M
- 50S ribosomal protein L15
- Chain R
- 50S ribosomal protein L20
- Chain S
- 50S ribosomal protein L21
Coloring options: