J5_6B4V_009

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG

Length

26 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6B4V_009 not in the Motif Atlas

Homologous match to J5_4LFB_001

Geometric discrepancy: 0.0971

The information below is about J5_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_70703.1

Basepair signature

cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6B4V|1|EB|C|36
6B4V|1|EB|U|37
6B4V|1|EB|G|38
6B4V|1|EB|G|39
*
6B4V|1|EB|C|403
6B4V|1|EB|U|404
6B4V|1|EB|U|405
6B4V|1|EB|G|406
*
6B4V|1|EB|C|436
6B4V|1|EB|U|437
6B4V|1|EB|G|438
6B4V|1|EB|A|439
6B4V|1|EB|A|440
6B4V|1|EB|C|442
*
6B4V|1|EB|G|492
6B4V|1|EB|G|493
6B4V|1|EB|U|494
6B4V|1|EB|A|495
6B4V|1|EB|A|496
6B4V|1|EB|U|497
6B4V|1|EB|A|498
6B4V|1|EB|G|500
*
6B4V|1|EB|C|545
6B4V|1|EB|G|546
6B4V|1|EB|A|547
6B4V|1|EB|G|548

Current chains

Chain EB

16S ribosomal RNA

Nearby chains

Chain QC

30S ribosomal protein S4

Chain YC

30S ribosomal protein S12