J5_6B4V_010

3D structure

PDB id

6B4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Antibiotic blasticidin S and E. coli release factor 1 bound to the 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

6B4V|1|EB|A|109, 6B4V|1|EB|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6B4V_010 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.1291

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.1

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6B4V|1|EB|C|58
6B4V|1|EB|A|59
6B4V|1|EB|A|60
6B4V|1|EB|G|61
*
6B4V|1|EB|C|106
6B4V|1|EB|G|107
6B4V|1|EB|G|108
6B4V|1|EB|A|109
6B4V|1|EB|C|110
6B4V|1|EB|G|111
6B4V|1|EB|G|112
6B4V|1|EB|G|113
*
6B4V|1|EB|C|314
6B4V|1|EB|A|315
6B4V|1|EB|G|316
*
6B4V|1|EB|C|337
6B4V|1|EB|A|338
6B4V|1|EB|C|339
*
6B4V|1|EB|G|350
6B4V|1|EB|G|351
6B4V|1|EB|C|352
6B4V|1|EB|A|353
6B4V|1|EB|G|354

Current chains

Chain EB

16S ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S16

Chain GD

30S ribosomal protein S20

Chain PB

50S ribosomal protein L14