3D structure

PDB id
6BOH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Antibiotic blasticidin S and E. coli release factor 1 (containing deletion 302-304) bound to the 70S ribosome
Experimental method
X-RAY DIFFRACTION
Resolution
3.4 Å

Loop

Sequence
CUGG*CUUG*CUGAAC*GGUAAUAG*CGAG
Length
26 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6BOH_001 not in the Motif Atlas
Homologous match to J5_4LFB_001
Geometric discrepancy: 0.0879
The information below is about J5_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_70703.1
Basepair signature
cWW-F-tWH-F-F-cWW-cWW-cWH-cWH-cWW-tSH-tWH-tHW-tHS-cWW
Number of instances in this motif group
1

Unit IDs

6BOH|1|A|C|36
6BOH|1|A|U|37
6BOH|1|A|G|38
6BOH|1|A|G|39
*
6BOH|1|A|C|403
6BOH|1|A|U|404
6BOH|1|A|U|405
6BOH|1|A|G|406
*
6BOH|1|A|C|436
6BOH|1|A|U|437
6BOH|1|A|G|438
6BOH|1|A|A|439
6BOH|1|A|A|440
6BOH|1|A|C|442
*
6BOH|1|A|G|492
6BOH|1|A|G|493
6BOH|1|A|U|494
6BOH|1|A|A|495
6BOH|1|A|A|496
6BOH|1|A|U|497
6BOH|1|A|A|498
6BOH|1|A|G|500
*
6BOH|1|A|C|545
6BOH|1|A|G|546
6BOH|1|A|A|547
6BOH|1|A|G|548

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain NA
50S ribosomal protein S4
Chain VA
30S ribosomal protein S12

Coloring options:


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