J5_6BY1_016
3D structure
- PDB id
- 6BY1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli pH03H9 complex
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.94 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 6BY1|1|DA|U|1758, 6BY1|1|DA|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6BY1_016 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.1105
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6BY1|1|DA|G|1674
6BY1|1|DA|C|1675
6BY1|1|DA|A|1676
6BY1|1|DA|A|1677
6BY1|1|DA|A|1678
6BY1|1|DA|A|1679
6BY1|1|DA|U|1680
6BY1|1|DA|G|1681
6BY1|1|DA|G|1682
*
6BY1|1|DA|C|1706
6BY1|1|DA|G|1707
*
6BY1|1|DA|U|1751
6BY1|1|DA|C|1752
*
6BY1|1|DA|G|1756
6BY1|1|DA|A|1757
6BY1|1|DA|U|1758
6BY1|1|DA|A|1759
6BY1|1|DA|C|1760
6BY1|1|DA|C|1761
6BY1|1|DA|A|1762
6BY1|1|DA|G|1763
6BY1|1|DA|C|1764
*
6BY1|1|DA|G|1988
6BY1|1|DA|G|1989
6BY1|1|DA|C|1990
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
- Chain DD
- 50S ribosomal protein L3
- Chain DK
- 50S ribosomal protein L14
- Chain DP
- 50S ribosomal protein L19
Coloring options: