J5_6BZ6_003

3D structure

PDB id

6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site

Experimental method

X-RAY DIFFRACTION

Resolution

3.18 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6BZ6|1|RA|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6BZ6_003 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0801

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_01737.2

Basepair signature

cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F

Number of instances in this motif group

5

Unit IDs

6BZ6|1|RA|C|47
6BZ6|1|RA|G|48
6BZ6|1|RA|A|49
6BZ6|1|RA|U|50
6BZ6|1|RA|G|51
6BZ6|1|RA|A|52
6BZ6|1|RA|A|53
6BZ6|1|RA|G|54
*
6BZ6|1|RA|C|116
6BZ6|1|RA|G|117
6BZ6|1|RA|A|118
6BZ6|1|RA|A|119
6BZ6|1|RA|U|120
6BZ6|1|RA|G|121
*
6BZ6|1|RA|C|130
6BZ6|1|RA|G|131
*
6BZ6|1|RA|C|148
6BZ6|1|RA|A|149
6BZ6|1|RA|C|150
*
6BZ6|1|RA|G|176
6BZ6|1|RA|G|177
6BZ6|1|RA|G|178

Current chains

Chain RA

23S rRNA

Nearby chains

Chain R7

50S ribosomal protein L34

Chain RX

50S ribosomal protein L23