3D structure

PDB id
6BZ6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Thermus thermophilus 70S complex containing 16S G347U ram mutation and empty A site
Experimental method
X-RAY DIFFRACTION
Resolution
3.18 Å

Loop

Sequence
CAAG*CGGACGGG*CAG*CAC*GGCAG
Length
23 nucleotides
Bulged bases
6BZ6|1|XA|A|109, 6BZ6|1|XA|C|352
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6BZ6_011 not in the Motif Atlas
Homologous match to J5_4LFB_002
Geometric discrepancy: 0.0892
The information below is about J5_4LFB_002
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_59910.6
Basepair signature
cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
Number of instances in this motif group
4

Unit IDs

6BZ6|1|XA|C|58
6BZ6|1|XA|A|59
6BZ6|1|XA|A|60
6BZ6|1|XA|G|61
*
6BZ6|1|XA|C|106
6BZ6|1|XA|G|107
6BZ6|1|XA|G|108
6BZ6|1|XA|A|109
6BZ6|1|XA|C|110
6BZ6|1|XA|G|111
6BZ6|1|XA|G|112
6BZ6|1|XA|G|113
*
6BZ6|1|XA|C|314
6BZ6|1|XA|A|315
6BZ6|1|XA|G|316
*
6BZ6|1|XA|C|337
6BZ6|1|XA|A|338
6BZ6|1|XA|C|339
*
6BZ6|1|XA|G|350
6BZ6|1|XA|G|351
6BZ6|1|XA|C|352
6BZ6|1|XA|A|353
6BZ6|1|XA|G|354

Current chains

Chain XA
16S rRNA

Nearby chains

Chain XP
30S ribosomal protein S16
Chain XT
30S ribosomal protein S20
Chain YO
50S ribosomal protein L14
Chain YT
50S ribosomal protein L19

Coloring options:


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