3D structure

PDB id
6CFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with D-histidyl-CAM and bound to protein Y (YfiA) at 2.7A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.7 Å

Loop

Sequence
CGAUGAAG*CGAAUG*CG*CAC*GGG
Length
22 nucleotides
Bulged bases
6CFK|1|1A|U|49
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6CFK_001 not in the Motif Atlas
Homologous match to J5_9DFE_001
Geometric discrepancy: 0.0455
The information below is about J5_9DFE_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_01737.2
Basepair signature
cWW-F-cWW-F-cWW-tSH-tHH-tHS-cWW-cWW-cWW-F
Number of instances in this motif group
5

Unit IDs

6CFK|1|1A|C|46
6CFK|1|1A|G|47
6CFK|1|1A|A|48
6CFK|1|1A|U|49
6CFK|1|1A|G|50
6CFK|1|1A|A|51
6CFK|1|1A|A|52
6CFK|1|1A|G|53
*
6CFK|1|1A|C|114
6CFK|1|1A|G|115
6CFK|1|1A|A|116
6CFK|1|1A|A|117
6CFK|1|1A|U|118
6CFK|1|1A|G|119
*
6CFK|1|1A|C|128
6CFK|1|1A|G|129
*
6CFK|1|1A|C|148
6CFK|1|1A|A|149
6CFK|1|1A|C|150
*
6CFK|1|1A|G|165
6CFK|1|1A|G|166
6CFK|1|1A|G|167

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 17
50S ribosomal protein L34
Chain 1X
50S ribosomal protein L23

Coloring options:


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