J5_6DTI_002

3D structure

PDB id

6DTI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin

Experimental method

X-RAY DIFFRACTION

Resolution

3.54 Å

Loop

Sequence

CAAG*CGGACGGG*CAG*CAC*GGCAG

Length

23 nucleotides

Bulged bases

6DTI|1|A|A|102, 6DTI|1|A|C|348

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6DTI_002 not in the Motif Atlas

Homologous match to J5_4LFB_002

Geometric discrepancy: 0.0659

The information below is about J5_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.6

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6DTI|1|A|C|58
6DTI|1|A|A|59
6DTI|1|A|A|60
6DTI|1|A|G|61
*
6DTI|1|A|C|99
6DTI|1|A|G|100
6DTI|1|A|G|101
6DTI|1|A|A|102
6DTI|1|A|C|103
6DTI|1|A|G|104
6DTI|1|A|G|105
6DTI|1|A|G|106
*
6DTI|1|A|C|310
6DTI|1|A|A|311
6DTI|1|A|G|312
*
6DTI|1|A|C|333
6DTI|1|A|A|334
6DTI|1|A|C|335
*
6DTI|1|A|G|346
6DTI|1|A|G|347
6DTI|1|A|C|348
6DTI|1|A|A|349
6DTI|1|A|G|350

Current chains

Chain A

16s rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20