J5_6DZK_003
3D structure
- PDB id
- 6DZK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM Structure of Mycobacterium smegmatis C(minus) 30S ribosomal subunit with MPY
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CAAG*CGAACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 6DZK|1|A|A|105, 6DZK|1|A|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6DZK_003 not in the Motif Atlas
- Homologous match to J5_4LFB_002
- Geometric discrepancy: 0.1191
- The information below is about J5_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.2
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6DZK|1|A|C|62
6DZK|1|A|A|63
6DZK|1|A|A|64
6DZK|1|A|G|65
*
6DZK|1|A|C|102
6DZK|1|A|G|103
6DZK|1|A|A|104
6DZK|1|A|A|105
6DZK|1|A|C|106
6DZK|1|A|G|107
6DZK|1|A|G|108
6DZK|1|A|G|109
*
6DZK|1|A|C|314
6DZK|1|A|A|315
6DZK|1|A|C|316
*
6DZK|1|A|G|337
6DZK|1|A|A|338
6DZK|1|A|C|339
*
6DZK|1|A|G|350
6DZK|1|A|G|351
6DZK|1|A|C|352
6DZK|1|A|A|353
6DZK|1|A|G|354
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain P
- 30S ribosomal protein S16
- Chain T
- 30S ribosomal protein S20
Coloring options: