3D structure

PDB id
6ENF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-P
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GCAAAAUGG*CG*UC*GAUACCAGC*GGC
Length
25 nucleotides
Bulged bases
6ENF|1|A|U|1758, 6ENF|1|A|G|1763
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6ENF_004 not in the Motif Atlas
Homologous match to J5_5J7L_016
Geometric discrepancy: 0.105
The information below is about J5_5J7L_016
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J5_62523.6
Basepair signature
cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
Number of instances in this motif group
7

Unit IDs

6ENF|1|A|G|1674
6ENF|1|A|C|1675
6ENF|1|A|A|1676
6ENF|1|A|A|1677
6ENF|1|A|A|1678
6ENF|1|A|A|1679
6ENF|1|A|U|1680
6ENF|1|A|G|1681
6ENF|1|A|G|1682
*
6ENF|1|A|C|1706
6ENF|1|A|G|1707
*
6ENF|1|A|U|1751
6ENF|1|A|C|1752
*
6ENF|1|A|G|1756
6ENF|1|A|A|1757
6ENF|1|A|U|1758
6ENF|1|A|A|1759
6ENF|1|A|C|1760
6ENF|1|A|C|1761
6ENF|1|A|A|1762
6ENF|1|A|G|1763
6ENF|1|A|C|1764
*
6ENF|1|A|G|1988
6ENF|1|A|G|1989
6ENF|1|A|C|1990

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain D
50S ribosomal protein L3
Chain K
50S ribosomal protein L14
Chain P
50S ribosomal protein L19
Chain a
Small subunit ribosomal RNA; SSU rRNA

Coloring options:


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