J5_6ERI_005
3D structure
- PDB id
- 6ERI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the chloroplast ribosome with chl-RRF and hibernation-promoting factor
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GCAAAAUAG*UG*UC*GUGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 6ERI|1|AA|G|1768, 6ERI|1|AA|G|1773
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6ERI_005 not in the Motif Atlas
- Homologous match to J5_5J7L_016
- Geometric discrepancy: 0.1253
- The information below is about J5_5J7L_016
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_62523.6
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6ERI|1|AA|G|1710
6ERI|1|AA|C|1711
6ERI|1|AA|A|1712
6ERI|1|AA|A|1713
6ERI|1|AA|A|1714
6ERI|1|AA|A|1715
6ERI|1|AA|U|1716
6ERI|1|AA|A|1717
6ERI|1|AA|G|1718
*
6ERI|1|AA|U|1742
6ERI|1|AA|G|1743
*
6ERI|1|AA|U|1761
6ERI|1|AA|C|1762
*
6ERI|1|AA|G|1766
6ERI|1|AA|U|1767
6ERI|1|AA|G|1768
6ERI|1|AA|A|1769
6ERI|1|AA|C|1770
6ERI|1|AA|C|1771
6ERI|1|AA|A|1772
6ERI|1|AA|G|1773
6ERI|1|AA|G|1774
*
6ERI|1|AA|C|2002
6ERI|1|AA|A|2003
6ERI|1|AA|C|2004
Current chains
- Chain AA
- 23S ribosomal RNA
Nearby chains
- Chain AB
- 4.5S ribosomal RNA
- Chain AD
- 50S ribosomal protein L3, chloroplastic
- Chain AK
- 50S ribosomal protein L14, chloroplastic
- Chain AP
- 50S ribosomal protein L19, chloroplastic
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: