J5_6FKR_001

3D structure

PDB id

6FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the dolphin proline-rich antimicrobial peptide Tur1A bound to the Thermus thermophilus 70S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CG*CAC*GGG

Length

22 nucleotides

Bulged bases

6FKR|1|1A|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6FKR_001 not in the Motif Atlas

Homologous match to J5_9DFE_001

Geometric discrepancy: 0.0491

The information below is about J5_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.1

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-F-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

6FKR|1|1A|C|47
6FKR|1|1A|G|48
6FKR|1|1A|A|49
6FKR|1|1A|U|50
6FKR|1|1A|G|51
6FKR|1|1A|A|52
6FKR|1|1A|A|53
6FKR|1|1A|G|54
*
6FKR|1|1A|C|116
6FKR|1|1A|G|117
6FKR|1|1A|A|118
6FKR|1|1A|A|119
6FKR|1|1A|U|120
6FKR|1|1A|G|121
*
6FKR|1|1A|C|130
6FKR|1|1A|G|131
*
6FKR|1|1A|C|148
6FKR|1|1A|A|149
6FKR|1|1A|C|150
*
6FKR|1|1A|G|176
6FKR|1|1A|G|177
6FKR|1|1A|G|178

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains

Chain 17

50S ribosomal protein L34

Chain 1X

50S ribosomal protein L23