J5_6FRK_006
3D structure
- PDB id
- 6FRK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- UUGA*UUUG*CA*UG*CAGAAAA
- Length
- 19 nucleotides
- Bulged bases
- 6FRK|1|5|G|3922, 6FRK|1|5|A|4376, 6FRK|1|5|G|4377, 6FRK|1|5|A|4378, 6FRK|1|5|A|4379
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6FRK_006 not in the Motif Atlas
- Homologous match to J5_8C3A_006
- Geometric discrepancy: 0.3123
- The information below is about J5_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6FRK|1|5|U|3920
6FRK|1|5|U|3921
6FRK|1|5|G|3922
6FRK|1|5|A|3923
*
6FRK|1|5|U|4188
6FRK|1|5|U|4189
6FRK|1|5|U|4190
6FRK|1|5|G|4191
*
6FRK|1|5|C|4204
6FRK|1|5|A|4205
*
6FRK|1|5|U|4227
6FRK|1|5|G|4228
*
6FRK|1|5|C|4375
6FRK|1|5|A|4376
6FRK|1|5|G|4377
6FRK|1|5|A|4378
6FRK|1|5|A|4379
6FRK|1|5|A|4380
6FRK|1|5|A|4381
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain N
- Ribosomal protein L15
- Chain Q
- Ribosomal protein eL18
- Chain T
- Ribosomal protein eL21
- Chain a
- Ribosomal protein uL15
- Chain o
- Ribosomal protein eL42
Coloring options: