3D structure

PDB id
6FTG (explore in PDB, NAKB, or RNA 3D Hub)
Description
Subtomogram average of OST-containing ribosome-translocon complexes from canine rough microsomal membranes
Experimental method
ELECTRON MICROSCOPY
Resolution
9.1 Å

Loop

Sequence
UUGA*UUUG*CA*UG*CAGAAAA
Length
19 nucleotides
Bulged bases
6FTG|1|u|G|3922, 6FTG|1|u|A|4376, 6FTG|1|u|G|4377, 6FTG|1|u|A|4378, 6FTG|1|u|A|4379
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J5_6FTG_005 not in the Motif Atlas
Homologous match to J5_8C3A_006
Geometric discrepancy: 0.3033
The information below is about J5_8C3A_006
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6FTG|1|u|U|3920
6FTG|1|u|U|3921
6FTG|1|u|G|3922
6FTG|1|u|A|3923
*
6FTG|1|u|U|4188
6FTG|1|u|U|4189
6FTG|1|u|U|4190
6FTG|1|u|G|4191
*
6FTG|1|u|C|4204
6FTG|1|u|A|4205
*
6FTG|1|u|U|4227
6FTG|1|u|G|4228
*
6FTG|1|u|C|4375
6FTG|1|u|A|4376
6FTG|1|u|G|4377
6FTG|1|u|A|4378
6FTG|1|u|A|4379
6FTG|1|u|A|4380
6FTG|1|u|A|4381

Current chains

Chain u
28S ribosomal RNA

Nearby chains

Chain A
uL2
Chain N
Ribosomal protein L15
Chain Q
uL14
Chain T
eL21
Chain a
uL15
Chain o
eL42

Coloring options:


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