J5_6FYX_001

3D structure

PDB id

6FYX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAC*GUAG

Length

26 nucleotides

Bulged bases

6FYX|1|2|A|543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_6FYX_001 not in the Motif Atlas

Homologous match to J5_8C3A_018

Geometric discrepancy: 0.0914

The information below is about J5_8C3A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_19320.1

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

1

Unit IDs

6FYX|1|2|C|31
6FYX|1|2|U|32
6FYX|1|2|U|33
6FYX|1|2|G|34
6FYX|1|2|U|35
*
6FYX|1|2|A|472
6FYX|1|2|A|473
6FYX|1|2|A|474
6FYX|1|2|U|475
6FYX|1|2|A|476
6FYX|1|2|A|477
6FYX|1|2|C|478
*
6FYX|1|2|G|508
6FYX|1|2|G|509
6FYX|1|2|A|510
6FYX|1|2|A|511
6FYX|1|2|U|512
6FYX|1|2|G|513
*
6FYX|1|2|C|542
6FYX|1|2|A|543
6FYX|1|2|A|544
6FYX|1|2|C|545
*
6FYX|1|2|G|591
6FYX|1|2|U|592
6FYX|1|2|A|593
6FYX|1|2|G|594

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

KLLA0E23673p

Chain X

KLLA0B11231p

Chain e

40S ribosomal protein S30

Chain p

Eukaryotic translation initiation factor 3 subunit B