J5_6FYY_001
3D structure
- PDB id
- 6FYY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a partial yeast 48S preinitiation complex with eIF5 N-terminal domain (model C2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.02 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CAAC*GUAG
- Length
- 26 nucleotides
- Bulged bases
- 6FYY|1|2|A|543
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_6FYY_001 not in the Motif Atlas
- Homologous match to J5_8C3A_018
- Geometric discrepancy: 0.1012
- The information below is about J5_8C3A_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_19320.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6FYY|1|2|C|31
6FYY|1|2|U|32
6FYY|1|2|U|33
6FYY|1|2|G|34
6FYY|1|2|U|35
*
6FYY|1|2|A|472
6FYY|1|2|A|473
6FYY|1|2|A|474
6FYY|1|2|U|475
6FYY|1|2|A|476
6FYY|1|2|A|477
6FYY|1|2|C|478
*
6FYY|1|2|G|508
6FYY|1|2|G|509
6FYY|1|2|A|510
6FYY|1|2|A|511
6FYY|1|2|U|512
6FYY|1|2|G|513
*
6FYY|1|2|C|542
6FYY|1|2|A|543
6FYY|1|2|A|544
6FYY|1|2|C|545
*
6FYY|1|2|G|591
6FYY|1|2|U|592
6FYY|1|2|A|593
6FYY|1|2|G|594
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain J
- KLLA0E23673p
- Chain X
- KLLA0B11231p
- Chain e
- 40S ribosomal protein S30
- Chain p
- Eukaryotic translation initiation factor 3 subunit B
Coloring options: